Bra006429 (ATCIMS, METS1, ATMETS, ATMS1)

Aliases : ATCIMS, METS1, ATMETS, ATMS1

Description : methyl-tetrahydrofolate-dependent methionine synthase. EC_2.1 transferase transferring one-carbon group

Gene families : OG0000631 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000631_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra006429
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_112

Target	Alias	Description	ECC score	Gene Family Method
Lsat_1_v5_gn_2_104041.1	ATCIMS, METS1,...	EC_2.1 transferase transferring one-carbon group....	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_6_32121.1	ATCIMS, METS1,...	EC_2.1 transferase transferring one-carbon group....	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.03909	ATCIMS, METS1,...	EC_2.1 transferase transferring one-carbon group....	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	None	Extended
BP	GO:0000097	sulfur amino acid biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003871	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006555	methionine metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008172	S-methyltransferase activity	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0008652	amino acid biosynthetic process	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009066	aspartate family amino acid metabolic process	None	Extended
BP	GO:0009067	aspartate family amino acid biosynthetic process	None	Extended
BP	GO:0009086	methionine biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0042085	5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0001932	regulation of protein phosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004489	methylenetetrahydrofolate reductase (NAD(P)H) activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004650	polygalacturonase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019900	kinase binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019901	protein kinase binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031072	heat shock protein binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031399	regulation of protein modification process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042325	regulation of phosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043549	regulation of kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0045859	regulation of protein kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046855	obsolete inositol phosphate dephosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051338	regulation of transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1902600	proton transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1904029	regulation of cyclin-dependent protein kinase activity	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR013215	Cbl-indep_Met_Synth_N	3	316
IPR002629	Met_Synth_C/arc	432	755

External Links

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Bra006429 (ATCIMS, METS1, ATMETS, ATMS1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation