Bra000638 (BP1, KNAT1, BP)

Aliases : BP1, KNAT1, BP

Description : KNOX-type transcription factor

Gene families : OG0014735 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra000638
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_102

Target	Alias	Description	ECC score	Gene Family Method	Actions
Spov3_chr2.02852	BP1, KNAT1, BP	KNOX-type transcription factor	0.04	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004860	protein kinase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006631	fatty acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006633	fatty acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007275	multicellular organism development	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008131	primary amine oxidase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019207	kinase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019210	kinase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019887	protein kinase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032501	multicellular organismal process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032502	developmental process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0048038	quinone binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048856	anatomical structure development	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140110	transcription regulator activity	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005541	KNOX2	177	222
IPR005539	ELK_dom	268	289
IPR008422	Homeobox_KN_domain	308	347
IPR005540	KNOX1	122	163

External Links

No external refs found!

Bra000638 (BP1, KNAT1, BP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation