Lsat_1_v5_gn_5_77240.1

Description : isoleucine-tRNA ligase. EC_6.1 ligase forming carbon-oxygen bond

Gene families : OG0001637 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001637_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_77240.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_150

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra025459	No alias	isoleucine-tRNA ligase. EC_6.1 ligase forming carbon-oxygen bond	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0002097	tRNA wobble base modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0002098	tRNA wobble uridine modification	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003922	GMP synthase (glutamine-hydrolyzing) activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004819	glutamine-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004832	valine-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005681	spliceosomal complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006177	GMP biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006425	glutaminyl-tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006886	intracellular protein transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008104	protein localization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008235	metalloexopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015031	protein transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016462	pyrophosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019899	enzyme binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030126	COPI vesicle coat	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0033036	macromolecule localization	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0033588	elongator holoenzyme complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0034511	U3 snoRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045184	establishment of protein localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046037	GMP metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051649	establishment of localization in cell	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070006	metalloaminopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070727	cellular macromolecule localization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002300	aa-tRNA-synth_Ia	18	659
IPR013155	M/V/L/I-tRNA-synth_anticd-bd	717	867

External Links

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Lsat_1_v5_gn_5_77240.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation