Lsat_1_v5_gn_5_6501.1 (PrfB3)

Aliases : PrfB3

Description : translation peptide chain release factor *(PrfB)

Gene families : OG0017869 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_6501.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_47

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003747	translation release factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006415	translational termination	IEA	Interproscan
MF	GO:0008079	translation termination factor activity	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0032984	protein-containing complex disassembly	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0001671	ATPase activator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004832	valine-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006528	asparagine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006529	asparagine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008649	rRNA methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031167	rRNA methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0032040	small-subunit processome	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051087	protein-folding chaperone binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0060590	ATPase regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070037	rRNA (pseudouridine) methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070475	rRNA base methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140677	molecular function activator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000352	Pep_chain_release_fac_I	314	391
IPR005139	PCRF	92	260

External Links

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Lsat_1_v5_gn_5_6501.1 (PrfB3)

Expression Profile

Co-expression Networks

Functional Annotation