Lsat_1_v5_gn_5_4380.1 (EMB2296)

Aliases : EMB2296

Description : component *(uL2) of large ribosomal-subunit (LSU) proteome

Gene families : OG0000375 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000375_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_4380.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
Bra010550	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra011664	EMB2296	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.1	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra017749	EMB2296	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.14	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra039911	EMB2296	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.12	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Mp7g01860.1	EMB2296	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Mp7g08730.1	EMB2296	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00337	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.11	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.00075	No alias	component *(uL2) of large ribosomal-subunit (LSU) proteome	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003883	CTP synthase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR022666	Ribosomal_uL2_RNA-bd_dom	13	89
IPR022669	Ribosomal_uL2_C	98	225

External Links

No external refs found!

Lsat_1_v5_gn_5_4380.1 (EMB2296)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation