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  5. Bra006279

Bra006279


Description : EC_4.2 carbon-oxygen lyase. pectate lyase


Gene families : OG0002986 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002986_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra006279
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_183


Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009415 response to water IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009628 response to abiotic stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010035 response to inorganic substance IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015299 obsolete solute:proton antiporter activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071569 protein ufmylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901700 response to oxygen-containing compound IEP Brassica rapa GO terms from Neighborhoods
BP GO:1902074 response to salt IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 27 106
IPR002022 Pec_lyase 219 390
No external refs found!