Lsat_1_v5_gn_5_179060.1 (RPT2a)

Aliases : RPT2a

Description : regulatory component *(RPT2) of 26S proteasome

Gene families : OG0001628 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001628_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_179060.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_130

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra011079	RPT2a	regulatory component *(RPT2) of 26S proteasome	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.04220	RPT2a	regulatory component *(RPT2) of 26S proteasome	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005048	signal sequence binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005839	proteasome core complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006099	tricarboxylic acid cycle	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006621	protein retention in ER lumen	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006897	endocytosis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008152	metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008234	cysteine-type peptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008312	7S RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008483	transaminase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009056	catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009116	nucleoside metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016579	protein deubiquitination	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032507	maintenance of protein location in cell	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0033218	amide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0035437	maintenance of protein localization in endoplasmic reticulum	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0042277	peptide binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043248	proteasome assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043687	post-translational protein modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044238	primary metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045185	maintenance of protein location	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0046923	ER retention sequence binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0048500	signal recognition particle	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0050997	quaternary ammonium group binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051235	maintenance of location	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051651	maintenance of location in cell	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0060090	molecular adaptor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070001	aspartic-type peptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070403	NAD+ binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070646	protein modification by small protein removal	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072595	maintenance of protein localization in organelle	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0098657	import into cell	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0101005	deubiquitinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901575	organic substance catabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901657	glycosyl compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR032501	Prot_ATP_ID_OB_2nd	114	167
IPR041569	AAA_lid_3	382	425
IPR003959	ATPase_AAA_core	227	360

External Links

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Lsat_1_v5_gn_5_179060.1 (RPT2a)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation