Lsat_1_v5_gn_5_166481.1 (RIBA3, AtRIBA3)

Aliases : RIBA3, AtRIBA3

Description : EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond. monofunctional GTP cyclohydrolase II *(RibA)

Gene families : OG0046070 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_166481.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_223

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006771	riboflavin metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009110	vitamin biosynthetic process	None	Extended
BP	GO:0009231	riboflavin biosynthetic process	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042364	water-soluble vitamin biosynthetic process	None	Extended
BP	GO:0042726	flavin-containing compound metabolic process	None	Extended
BP	GO:0042727	flavin-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004222	metalloendopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004325	ferrochelatase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004749	ribose phosphate diphosphokinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004813	alanine-tRNA ligase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006419	alanyl-tRNA aminoacylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006783	heme biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016778	diphosphotransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031072	heat shock protein binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042168	heme metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042440	pigment metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046148	pigment biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046855	obsolete inositol phosphate dephosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051536	iron-sulfur cluster binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051540	metal cluster binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0071949	FAD binding	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR032677	GTP_cyclohydro_II	315	480
IPR000422	DHBP_synthase_RibB	112	304

External Links

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Lsat_1_v5_gn_5_166481.1 (RIBA3, AtRIBA3)

Expression Profile

Co-expression Networks

Functional Annotation