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  5. Lsat_1_v5_gn_5_109060.1

Lsat_1_v5_gn_5_109060.1 (VCL1, VPS16, EMB258, MAN)


Aliases : VCL1, VPS16, EMB258, MAN

Description : not classified


Gene families : OG0000120 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_5_109060.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_14

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_8_13240.1 VCL1, VPS16, EMB258, MAN not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_9_102961.1 VCL1, VPS16, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004864 protein phosphatase inhibitor activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009966 regulation of signal transduction IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010646 regulation of cell communication IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010921 regulation of phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019212 phosphatase inhibitor activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019220 regulation of phosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0023051 regulation of signaling IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031399 regulation of protein modification process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0035303 regulation of dephosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0035304 regulation of protein dephosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051174 regulation of phosphorus metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051336 regulation of hydrolase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140678 molecular function inhibitor activity IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR026147 Rab3GAP1_conserved 65 116
IPR006925 Vps16_C 140 202
No external refs found!