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  5. Lsat_1_v5_gn_4_77281.1

Lsat_1_v5_gn_4_77281.1 (EMB3102, OTP82)


Aliases : EMB3102, OTP82

Description : not classified


Gene families : OG0000317 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000317_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_77281.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_72


Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005839 proteasome core complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006486 protein glycosylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016758 hexosyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030246 carbohydrate binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030247 polysaccharide binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043413 macromolecule glycosylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051603 proteolysis involved in protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0052689 carboxylic ester hydrolase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070085 glycosylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0140535 intracellular protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:2001070 starch binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR032867 DYW_dom 611 703
IPR002885 Pentatricopeptide_rpt 467 492
IPR002885 Pentatricopeptide_rpt 165 190
IPR002885 Pentatricopeptide_rpt 191 237
IPR002885 Pentatricopeptide_rpt 291 339
IPR002885 Pentatricopeptide_rpt 392 440
IPR002885 Pentatricopeptide_rpt 89 137
IPR046848 E_motif 512 575
No external refs found!