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  5. Lsat_1_v5_gn_4_43380.1

Lsat_1_v5_gn_4_43380.1


Description : component *(uS15) of small ribosomal-subunit (SSU) proteome


Gene families : OG0000740 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000740_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_43380.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Bra003427 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra004901 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra007556 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra014472 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra040316 No alias component *(uS15) of small ribosomal-subunit (SSU) proteome 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.03400 RPS13, RPS13A,... component *(uS15) of small ribosomal-subunit (SSU) proteome 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.04075 RPS13, RPS13A,... component *(uS15) of small ribosomal-subunit (SSU) proteome 0.11 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006414 translational elongation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008097 5S rRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0044391 ribosomal subunit IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000589 Ribosomal_uS15 74 145
IPR012606 Ribosomal_uS15_N 1 60
No external refs found!