Lsat_1_v5_gn_4_183181.1 (AtTRM61, TRM61)

Aliases : AtTRM61, TRM61

Description : EC_2.1 transferase transferring one-carbon group. component *(TRM61) of TRM61-TRM6 tRNA adenosine-methyltransferase complex

Gene families : OG0038051 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_183181.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_203

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	None	Extended
MF	GO:0008175	tRNA methyltransferase activity	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016426	tRNA (adenine) methyltransferase activity	None	Extended
MF	GO:0016429	tRNA (adenine-N1-)-methyltransferase activity	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0030488	tRNA methylation	IEA	Interproscan
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEA	Interproscan
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
CC	GO:0034708	methyltransferase complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
CC	GO:0043527	tRNA methyltransferase complex	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003690	double-stranded DNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005347	ATP transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0005471	ATP:ADP antiporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006355	regulation of DNA-templated transcription	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006862	nucleotide transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009889	regulation of biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015217	ADP transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015297	antiporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015748	organophosphate ester transport	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0015931	nucleobase-containing compound transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019222	regulation of metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031323	regulation of cellular metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0050789	regulation of biological process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0050794	regulation of cellular process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051252	regulation of RNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0065007	biological regulation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0080090	regulation of primary metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901702	salt transmembrane transporter activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR014816	tRNA_MeTrfase_Gcd14	69	311

External Links

No external refs found!

Lsat_1_v5_gn_4_183181.1 (AtTRM61, TRM61)

Expression Profile

Co-expression Networks

Functional Annotation