Lsat_1_v5_gn_4_134121.1


Description : not classified


Gene families : OG0036157 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_4_134121.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_133


Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008171 O-methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009451 RNA modification IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0009982 pseudouridine synthase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010024 phytochromobilin biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016866 intramolecular transferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019899 enzyme binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031267 small GTPase binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033013 tetrapyrrole metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033014 tetrapyrrole biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043648 dicarboxylic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0050897 cobalt ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051020 GTPase binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051202 phytochromobilin metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 172 233
IPR002885 Pentatricopeptide_rpt 104 161
IPR002885 Pentatricopeptide_rpt 258 287
IPR002885 Pentatricopeptide_rpt 363 392
IPR002885 Pentatricopeptide_rpt 289 326
IPR002885 Pentatricopeptide_rpt 424 472
No external refs found!