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  5. Lsat_1_v5_gn_3_32760.1

Lsat_1_v5_gn_3_32760.1


Description : component *(uS3) of small ribosomal-subunit (SSU) proteome


Gene families : OG0000538 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000538_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_3_32760.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Bra018233 No alias not classified 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra021722 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra022851 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra022859 No alias component *(uS3) of small ribosomal-subunit (SSU) proteome 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008097 5S rRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043226 organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0110165 cellular anatomical entity IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001351 Ribosomal_uS3_C 106 188
IPR004044 KH_dom_type_2 20 93
No external refs found!