Bra005129 (APD1)


Aliases : APD1

Description : regulatory E3 ubiquitin ligase (APD) involved in gametogenesis


Gene families : OG0003854 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003854_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra005129
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_42


Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0002376 immune system process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003997 acyl-CoA oxidase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005777 peroxisome IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006629 lipid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006635 fatty acid beta-oxidation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006950 response to stress IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006952 defense response IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006955 immune response IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007034 vacuolar transport IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008200 ion channel inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009062 fatty acid catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009605 response to external stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009607 response to biotic stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016042 lipid catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016054 organic acid catabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016247 channel regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016248 channel inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016491 oxidoreductase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016840 carbon-nitrogen lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016843 amine-lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016844 strictosidine synthase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017080 sodium channel regulator activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0019395 fatty acid oxidation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019871 sodium channel inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0030258 lipid modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034440 lipid oxidation IEP Brassica rapa GO terms from Neighborhoods
CC GO:0042579 microbody IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043207 response to external biotic stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044242 cellular lipid catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044248 cellular catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044282 small molecule catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP Brassica rapa GO terms from Neighborhoods
BP GO:0045087 innate immune response IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046395 carboxylic acid catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0050896 response to stimulus IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051707 response to other organism IEP Brassica rapa GO terms from Neighborhoods
BP GO:0072329 monocarboxylic acid catabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0098542 defense response to other organism IEP Brassica rapa GO terms from Neighborhoods
MF GO:0098772 molecular function regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0099106 ion channel regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140678 molecular function inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR032010 APD1-4_M 111 183
IPR032008 APD1-4_N 44 108
No external refs found!