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Aliases : PDM3, EMB3140
Description : plastidial splicing factor *(PDM3)
Gene families : OG0044170 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_90480.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_104 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003674 | molecular_function | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005488 | binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005777 | peroxisome | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005839 | proteasome core complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006282 | regulation of DNA repair | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006486 | protein glycosylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0007031 | peroxisome organization | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008270 | zinc ion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0010333 | terpene synthase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016311 | dephosphorylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0017076 | purine nucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0031072 | heat shock protein binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0032553 | ribonucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0036094 | small molecule binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0042579 | microbody | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0043167 | ion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0043168 | anion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0043169 | cation binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043413 | macromolecule glycosylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0043531 | ADP binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0046872 | metal ion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0048583 | regulation of response to stimulus | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051052 | regulation of DNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0051082 | unfolded protein binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0070085 | glycosylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0080134 | regulation of response to stress | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0080135 | regulation of cellular response to stress | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:2001070 | starch binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | 285 | 330 |
| IPR002885 | Pentatricopeptide_rpt | 391 | 434 |
| IPR002885 | Pentatricopeptide_rpt | 145 | 192 |
| IPR002885 | Pentatricopeptide_rpt | 530 | 559 |
| IPR002885 | Pentatricopeptide_rpt | 569 | 594 |
| IPR002885 | Pentatricopeptide_rpt | 463 | 489 |
| IPR002885 | Pentatricopeptide_rpt | 205 | 264 |
| IPR002885 | Pentatricopeptide_rpt | 351 | 383 |
| No external refs found! |