Lsat_1_v5_gn_2_67861.1 (XRN4, ATXRN4, AIN1, EIN5)


Aliases : XRN4, ATXRN4, AIN1, EIN5

Description : exoribonuclease *(XRN4)


Gene families : OG0018207 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_67861.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr1.01515 XRN4, ATXRN4, AIN1, EIN5 exoribonuclease *(XRN4) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005516 calmodulin binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006534 cysteine metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006790 sulfur compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009069 serine family amino acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009092 homoserine metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010035 response to inorganic substance IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010038 response to metal ion IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019346 transsulfuration IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019748 secondary metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030170 pyridoxal phosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044550 secondary metabolite biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046937 phytochelatin metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046938 phytochelatin biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0050667 homocysteine metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070279 vitamin B6 binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901605 alpha-amino acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR041412 Xrn1_helical 433 717
IPR041412 Xrn1_helical 323 423
IPR004859 Xrn1_N 1 249
IPR001878 Znf_CCHC 259 274
No external refs found!