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  5. Lsat_1_v5_gn_2_67821.1

Lsat_1_v5_gn_2_67821.1 (SAC56)


Aliases : SAC56

Description : component *(uL4) of large ribosomal-subunit (LSU) proteome


Gene families : OG0000744 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000744_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_67821.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Bra001302 SAC56 component *(uL4) of large ribosomal-subunit (LSU) proteome 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra005749 RPL4 component *(uL4) of large ribosomal-subunit (LSU) proteome 0.07 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra009560 RPL4 component *(uL4) of large ribosomal-subunit (LSU) proteome 0.06 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra029780 SAC56 component *(uL4) of large ribosomal-subunit (LSU) proteome 0.18 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra034075 SAC56 component *(uL4) of large ribosomal-subunit (LSU) proteome 0.14 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.01766 SAC56 component *(uL4) of large ribosomal-subunit (LSU) proteome 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr6.00569 SAC56 component *(uL4) of large ribosomal-subunit (LSU) proteome 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006414 translational elongation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008097 5S rRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002136 Ribosomal_uL4 26 265
IPR025755 Ribos_uL4_C_dom 280 352
No external refs found!