Lsat_1_v5_gn_2_41860.1

Description : not classified

Gene families : OG0000688 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000688_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_41860.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_89

Target	Alias	Description	ECC score	Gene Family Method	Actions
Lsat_1_v5_gn_4_179761.1	PSD2	not classified	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006812	monoatomic cation transport	None	Extended
BP	GO:0006813	potassium ion transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008324	monoatomic cation transmembrane transporter activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015079	potassium ion transmembrane transporter activity	IEA	Interproscan
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
BP	GO:0030001	metal ion transport	None	Extended
BP	GO:0034220	monoatomic ion transmembrane transport	None	Extended
MF	GO:0046873	metal ion transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0071805	potassium ion transmembrane transport	IEA	Interproscan
BP	GO:0098655	monoatomic cation transmembrane transport	None	Extended
BP	GO:0098660	inorganic ion transmembrane transport	None	Extended
BP	GO:0098662	inorganic cation transmembrane transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901702	salt transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006465	signal peptide processing	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008146	sulfotransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010215	cellulose microfibril organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016485	protein processing	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0017004	cytochrome complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030198	extracellular matrix organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032392	DNA geometric change	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032508	DNA duplex unwinding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043062	extracellular structure organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003855	K+_transporter	2	57

External Links

No external refs found!

Lsat_1_v5_gn_2_41860.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation