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Aliases : SMG7
Description : Nonsense-Mediated mRNA Decay protein *(SMG7)
Gene families : OG0000167 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000167_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_36520.1 | |
| Cluster | Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_132 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Lsat_1_v5_gn_4_24661.1 | No alias | not classified | 0.02 | OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000139 | Golgi membrane | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003674 | molecular_function | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003682 | chromatin binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0003972 | RNA ligase (ATP) activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004177 | aminopeptidase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004484 | mRNA guanylyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005338 | nucleotide-sugar transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005488 | binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0005515 | protein binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005681 | spliceosomal complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005694 | chromosome | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0005956 | protein kinase CK2 complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006354 | DNA-templated transcription elongation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006368 | transcription elongation by RNA polymerase II | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006370 | 7-methylguanosine mRNA capping | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006397 | mRNA processing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006473 | protein acetylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0008023 | transcription elongation factor complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008192 | RNA guanylyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008270 | zinc ion binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0008380 | RNA splicing | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0008452 | RNA ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0009452 | 7-methylguanosine RNA capping | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0010921 | regulation of phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0015165 | pyrimidine nucleotide-sugar transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0015780 | nucleotide-sugar transmembrane transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016071 | mRNA metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016311 | dephosphorylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016410 | N-acyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016570 | histone modification | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0016573 | histone acetylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0019207 | kinase regulator activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0019220 | regulation of phosphate metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0019887 | protein kinase regulator activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0019902 | phosphatase binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0019903 | protein phosphatase binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0030127 | COPII vesicle coat | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0031399 | regulation of protein modification process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0032991 | protein-containing complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0035303 | regulation of dephosphorylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0035304 | regulation of protein dephosphorylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0036260 | RNA capping | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0042393 | histone binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043543 | protein acylation | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043666 | regulation of phosphoprotein phosphatase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0043687 | post-translational protein modification | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0044877 | protein-containing complex binding | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051174 | regulation of phosphorus metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0051336 | regulation of hydrolase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0061630 | ubiquitin protein ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0061659 | ubiquitin-like protein ligase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0070568 | guanylyltransferase activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:0090481 | pyrimidine nucleotide-sugar transmembrane transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:0140993 | histone modifying activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901264 | carbohydrate derivative transport | IEP | Lactuca Sativa GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Lactuca Sativa GO terms from Neighborhoods |
| MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:1902554 | serine/threonine protein kinase complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:1902911 | protein kinase complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:1990234 | transferase complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Lactuca Sativa GO terms from Neighborhoods |
| No external refs found! |