Lsat_1_v5_gn_2_18861.1 (emb1796, NUWA)


Aliases : emb1796, NUWA

Description : not classified


Gene families : OG0044145 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_18861.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_150


Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003684 damaged DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003747 translation release factor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005634 nucleus IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005643 nuclear pore IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005759 mitochondrial matrix IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006177 GMP biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006289 nucleotide-excision repair IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006396 RNA processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006415 translational termination IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006913 nucleocytoplasmic transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008079 translation termination factor activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009123 nucleoside monophosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010498 proteasomal protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0017056 structural constituent of nuclear pore IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022411 cellular component disassembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030163 protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0031974 membrane-enclosed lumen IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032984 protein-containing complex disassembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0042254 ribosome biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043226 organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0043233 organelle lumen IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044085 cellular component biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046037 GMP metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051169 nuclear transport IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0070013 intracellular organelle lumen IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 383 430
IPR002885 Pentatricopeptide_rpt 164 212
IPR002885 Pentatricopeptide_rpt 312 338
IPR002885 Pentatricopeptide_rpt 274 301
IPR002885 Pentatricopeptide_rpt 457 482
IPR002885 Pentatricopeptide_rpt 352 378
No external refs found!