Bra004751 (POP4)

Aliases : POP4

Description : component *(RPP29/POP4) of RNA-dependent RNase P complex

Gene families : OG0021223 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra004751
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_252

Type	GO Term	Name	Evidence	Source
BP	GO:0000966	RNA 5'-end processing	None	Extended
BP	GO:0001682	tRNA 5'-leader removal	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0030677	ribonuclease P complex	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034471	ncRNA 5'-end processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0036260	RNA capping	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099116	tRNA 5'-end processing	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1902555	endoribonuclease complex	None	Extended
CC	GO:1905348	endonuclease complex	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0000502	proteasome complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005666	RNA polymerase III complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006354	DNA-templated transcription elongation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006383	transcription by RNA polymerase III	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0008023	transcription elongation factor complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008285	negative regulation of cell population proliferation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009894	regulation of catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016570	histone modification	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030117	membrane coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030127	COPII vesicle coat	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042127	regulation of cell population proliferation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042176	regulation of protein catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048193	Golgi vesicle transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048519	negative regulation of biological process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048523	negative regulation of cellular process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1905368	peptidase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1905369	endopeptidase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1990234	transferase complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002730	Rpp29/RNP1	219	293

External Links

No external refs found!

Bra004751 (POP4)

Expression Profile

Co-expression Networks

Functional Annotation