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  5. Lsat_1_v5_gn_2_120.1

Lsat_1_v5_gn_2_120.1 (ATRNL, ZYG3, AtRLG1, RLG1, RNL)


Aliases : ATRNL, ZYG3, AtRLG1, RLG1, RNL

Description : multifunctional tRNA ligase *(RLG1)


Gene families : OG0000120 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_2_120.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_187

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_3_9980.1 GRF1, GF14 CHI 14-3-3 phosphoprotein-binding protein *(GRF) 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0000287 magnesium ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004743 pyruvate kinase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0005375 copper ion transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006825 copper ion transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010215 cellulose microfibril organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0030127 COPII vesicle coat IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030198 extracellular matrix organization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0030955 potassium ion binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0031420 alkali metal ion binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032392 DNA geometric change IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032508 DNA duplex unwinding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0035434 copper ion transmembrane transport IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043062 extracellular structure organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0045229 external encapsulating structure organization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0048364 root development IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0048367 shoot system development IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0048731 system development IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0099402 plant organ development IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR006925 Vps16_C 196 275
No external refs found!