Heatmap: Cluster_187 (Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	Light: 268 uE m-2 s-1	Light: 202.5 uE m-2 s-1 (Control)	Light: 135 uE m-2 s-1	Light: 67.5 uE m-2 s-1	Photoperiod: L24	Photoperiod: L20D4 (Control)	Photoperiod: L12D12	Photoperiod: L8D16	RBW: 4:1:1 (Control)	RBW: 4:1:0	RBW: 3:1:1	RBW: 3:1:0	Nitrogen: 0%	Nitrogen: 25%	Nitrogen: 50%	Nitrogen: 100% (Control)	Nitrogen: 150%	Phosphorous: 0%	Phosphorous: 25%	Phosphorous: 50%	Phosphorous: 100% (Control)	Phosphorous: 150%	Potassium: 0%	Potassium: 25%	Potassium: 50%	Potassium: 100% (Control)	Potassium: 150%	Temperature: 20°C	Temperature: 25°C (Control)	Temperature: 30°C	Temperature: 35°C
Lsat_1_v5_gn_0_10801.1 (FT)	-	-1.22	-	1.1	0.96	0.16	-0.1	-0.29	-0.61	-0.43	-0.25	0.1	-1.43	-	-0.32	-1.29	-0.39	-0.01	-1.66	-0.04	-0.57	-1.33	0.87	-0.56	1.36	-0.13	1.11	2.05	-1.55	0.17	-0.22
Lsat_1_v5_gn_0_26800.1 (GGT2)	-	-	-	-	-	-	-	-	2.49	2.59	-	-	-	-	-	-	-	-	-	2.44	-	-	-	-	2.86	-	-	-	-	2.73	-
Lsat_1_v5_gn_0_32940.1 (CYP71B22)	-	-	-	-	-	-	1.02	1.09	1.18	-	-	-0.13	1.12	-	2.55	-	-	-	-	-	1.81	-	-	-	-	2.05	-	1.06	-	0.93	2.0
Lsat_1_v5_gn_0_34941.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.54	-	-	-	-	2.75	-	-	4.2	-	-	-	-	-
Lsat_1_v5_gn_1_104341.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-
Lsat_1_v5_gn_1_109620.1	-0.08	-0.04	-	-	-0.29	0.48	-0.21	-0.3	-0.61	0.83	-0.95	0.56	-0.95	-2.84	-1.22	0.91	1.13	-1.11	-0.89	-0.21	-2.06	0.16	-0.41	0.03	1.55	1.12	0.39	-1.32	-0.33	0.9	0.23
Lsat_1_v5_gn_1_116821.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.38	-	-	-	-	3.34
Lsat_1_v5_gn_1_126560.1 (SR34b)	0.55	-0.62	1.57	1.49	1.0	0.8	-0.91	1.57	0.59	-	-	0.18	-0.87	-0.53	-0.71	-	-	-0.16	0.42	-	-	-	-	0.06	-1.07	1.47	-	-0.88	-	0.75	1.4
Lsat_1_v5_gn_1_61421.1 (AGO5)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.3	-	-	-	-	-	-	4.4	-	-	-	-	-	-
Lsat_1_v5_gn_1_78981.1	-	0.82	-	0.79	-	-	-	-	0.41	-	-	0.34	-	-	0.7	0.95	-	-	-	-	-	-	-	-	3.06	2.08	-	-	-	1.73	2.45
Lsat_1_v5_gn_1_8421.1	-	-	-	-5.77	-6.5	-	-3.47	-5.57	-1.78	-	-	-	-	1.23	-	-	-	-	-	-	2.15	-	1.47	1.27	-	2.99	-	-5.8	1.57	2.45	1.15
Lsat_1_v5_gn_2_120.1 (RNL)	-	-	-	-	-	-	-	-	-	-	2.41	2.55	-	-	-	-	2.22	-	-	-	2.21	-	-	-	3.4	-	-	-	-	-	-
Lsat_1_v5_gn_2_126141.1 (LBD15)	-1.62	-2.03	0.51	-0.55	-0.74	-0.77	-0.12	-0.08	-0.51	0.34	-0.02	0.74	0.25	-0.46	-0.01	-0.54	0.66	0.29	1.02	0.46	1.21	-0.07	-	-0.46	0.6	-0.87	-0.18	-0.46	-1.48	-0.11	0.93
Lsat_1_v5_gn_2_131681.1	-	1.75	-	-	-	2.89	-	-	-	-	-	1.47	-	-	-	-	-	1.66	-	-	1.51	-	-	-	1.52	3.1	-	-	-	-	-
Lsat_1_v5_gn_2_7701.1 (MRP10)	1.26	-	-	1.14	-	-	-0.09	-	-	1.98	-	1.35	1.37	-	-	1.56	1.43	-	-	-0.44	-	0.04	-	-	-	-0.22	-	-	-	1.71	2.28
Lsat_1_v5_gn_3_100320.1	-0.91	0.55	0.43	-0.25	-0.85	-1.32	-0.22	-0.05	-0.38	-0.76	-0.22	-0.55	0.69	-0.58	-0.5	0.49	-0.5	-0.58	0.54	-0.18	0.15	0.39	-0.73	0.18	0.55	-1.26	0.4	-0.06	0.57	0.2	1.05
Lsat_1_v5_gn_3_118140.1 (JMJ17)	1.6	-	-	-	-	-0.37	-	2.29	0.75	-	2.89	0.74	-	0.92	-	-	0.79	-	0.53	-	-	-	-	-	2.53	-	-	-0.55	-	-	-
Lsat_1_v5_gn_3_29761.1 (GOXL4)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.29	-	-	-	-	-	-	4.41	-	-	-	-	-	-
Lsat_1_v5_gn_3_42141.1 (CRK15)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-
Lsat_1_v5_gn_3_42821.1	-	-	-	-	-	2.45	-	-	-	-	-	-	3.85	-	-	-	-	-	-	-	-	-	-	-	3.48	-	-	-	-	-	-
Lsat_1_v5_gn_4_11681.1	-0.32	-	0.9	-0.76	0.31	-1.23	-0.85	-	-1.02	-	-	-	-	-	0.09	0.93	-	2.8	-	-	1.55	-0.25	-0.5	-0.66	-	2.26	-	-	-0.6	0.97	1.37
Lsat_1_v5_gn_4_126221.1	-	-	-	0.68	-	-	1.12	-	-	-	-	-1.07	0.59	-0.08	-1.06	0.49	1.38	0.15	1.42	0.65	-	0.81	-	-1.25	1.59	-1.4	1.44	-1.14	1.34	-0.35	1.27
Lsat_1_v5_gn_4_150321.1 (PUM4)	-	-	-	-	0.81	-	-	2.53	-	-	-	-	2.47	-	-	-	-	-	-	-	-	-	-	-	4.16	-	-	-	-	-	-
Lsat_1_v5_gn_4_184261.1	-	-0.17	-	-	-	-	-	-0.22	0.74	0.71	-	-	-0.25	1.57	-	0.11	1.41	3.15	-	-	0.64	-	-	-	-0.23	2.13	-0.06	0.81	-	-	-
Lsat_1_v5_gn_4_22240.1 (AtNEAP2)	0.31	-2.47	1.38	-1.57	-0.68	-0.06	-0.28	-	-0.59	0.16	0.79	-0.39	0.53	-0.12	-1.43	-0.7	0.73	-0.19	-1.87	-1.26	0.86	-0.61	0.84	0.78	-1.71	0.06	0.26	-0.82	0.48	-0.51	1.13
Lsat_1_v5_gn_4_2241.1	-	-	-	-	-	-	0.01	1.66	-	-	-0.04	-	0.95	1.7	-0.01	-	0.05	-	-0.35	-	1.23	0.01	-	2.12	0.89	0.88	-	2.22	-	-	0.84
Lsat_1_v5_gn_4_25301.1 (CYP89A5)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.28	-	-	-	-	-	-	-	3.37	-	3.45	-	-	-
Lsat_1_v5_gn_4_28280.1	-	-	-	-	2.18	-	-	0.86	-	-	-	0.84	-	-	-	-	-	2.18	-	-	-	0.81	1.98	-	-	2.68	-	-	0.68	-	2.22
Lsat_1_v5_gn_4_55400.1 (GLS2)	-	-	-	-	-	-	-	-	-	-	-	-	3.69	2.59	-	-	-	-	-	-	-	-	-	-	3.59	-	-	-	-	-	-
Lsat_1_v5_gn_4_71080.1	-	-	-	-	-	-0.17	0.03	-	-0.22	1.38	-	-	0.97	-	-	-	0.08	-	-	-0.28	-	-	-	-	2.47	1.48	1.69	1.9	1.0	1.42	0.85
Lsat_1_v5_gn_5_155741.1 (MTV17)	-	-	-	-	-	-	-	-	3.3	-	-	-	3.41	-	-	-	-	-	-	-	-	-	-	-	-	3.4	-	-	-	-	-
Lsat_1_v5_gn_5_15861.1 (DCA1)	-	-	3.18	-	-	-	-	-	-	-	2.93	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.84	-	-	-	-	-
Lsat_1_v5_gn_5_170320.1 (PEX6)	0.56	-0.32	0.71	-1.33	0.76	0.69	-0.63	-1.54	-0.6	0.91	-0.91	-0.96	0.47	0.69	-1.35	-0.32	-1.51	0.42	-0.93	0.75	-2.64	0.68	-0.55	0.7	-1.08	0.02	-0.35	-0.45	-0.56	0.75	0.36
Lsat_1_v5_gn_5_177000.1 (GEX1)	-	-	-	-	-	-	-	-	-	-	-	-	2.79	-	-	-	-	-	-	-	-	-	-	-	3.38	-	-	-	-	3.37	1.74
Lsat_1_v5_gn_5_21400.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.98	-	-	-	-	3.93
Lsat_1_v5_gn_5_3800.1	-	-	0.89	-	0.55	0.47	0.52	-	-	-	1.64	-	-	-	-	0.79	0.85	0.55	-	-	-	1.6	-	-	-	2.87	0.41	-	-	-	2.34
Lsat_1_v5_gn_5_43320.1 (MEE47)	3.52	-	2.86	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.61	-	-	-	-	-
Lsat_1_v5_gn_5_51881.1 (SME2)	-	-	-	-	2.32	-0.58	-	-0.38	-	-	1.75	-	-	-0.34	-	-	-	2.46	-	-	-	-	-	-	-	3.19	-	1.02	0.61	-	1.14
Lsat_1_v5_gn_6_1241.1 (TOP2)	-1.12	-	-	0.38	2.07	-1.55	-	1.06	-	-0.24	-1.41	-	-0.37	-1.26	1.93	-	-0.56	1.53	-0.27	-0.01	-	-	-0.42	0.06	0.15	0.44	0.29	1.21	-	0.51	0.84
Lsat_1_v5_gn_6_48320.1 (MC4)	-	-	-	-	-	-	-	0.85	0.62	-	-	0.75	-	-	-	-	-	-	1.12	-	-	-	-	2.93	3.51	0.71	-	-	-	1.67	-
Lsat_1_v5_gn_6_53021.1 (TPP2)	0.73	-	-	-	0.41	0.51	-	-	-	-	-	-	-	0.78	-	-	-	1.92	0.36	1.35	1.92	-	-	-	-	3.21	-	-	-	0.49	1.5
Lsat_1_v5_gn_6_5901.1 (GS2)	0.46	0.9	-2.45	0.74	-2.01	-1.18	-0.97	-0.04	-0.47	-0.53	0.65	-0.78	0.61	-0.41	0.79	0.64	1.35	-	-1.29	0.28	-0.3	0.46	-1.41	-0.21	-1.13	1.15	-1.06	-0.02	-1.11	0.72	-0.42
Lsat_1_v5_gn_6_8060.1	-	-	-	-	-	-	-	0.46	-	-	-	-	2.64	-	-	0.42	-	2.47	-	-	-	-	-	2.14	-	3.07	-	1.03	-	-	0.74
Lsat_1_v5_gn_6_85780.1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.95	-	-	-	-	-
Lsat_1_v5_gn_6_88600.1 (BCHC1)	-	-0.88	-0.98	-	-	-	-1.3	-0.35	-	2.3	-	-	0.92	-	-	1.4	-1.15	0.71	-	-0.37	0.29	-	-	1.3	2.76	0.78	-	-0.31	-	0.29	1.18
Lsat_1_v5_gn_7_10201.1 (VAT1)	-	3.17	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3.18	-	-	-	-	1.12	-	0.85	3.16	-	-	-	-	-
Lsat_1_v5_gn_7_104540.1 (GLDP2)	-	-	-1.0	0.52	1.62	2.03	0.75	1.4	0.5	-1.47	-1.36	-	-20.42	1.29	-1.26	0.46	1.14	-0.48	-	-	-1.61	-	-	0.51	0.6	1.21	-	-	1.15	-1.14	-
Lsat_1_v5_gn_7_3841.1 (WDR5a)	-	-	2.56	-	-	-	2.19	-	-	-	-	-	-	-	-	-	2.38	-	-	-	2.29	-	-	-	-	2.41	-	-	-	-	2.36
Lsat_1_v5_gn_7_46901.1	-	-	-	-	-0.71	0.27	-	-	0.9	-	2.64	-	-	-	-0.32	-	-	1.78	1.16	-	-	-	-0.16	-	1.85	2.06	-	-	1.38	1.17	0.1
Lsat_1_v5_gn_7_51200.1 (P2K2)	-	-2.46	-0.42	-2.46	0.19	-1.87	0.41	-2.76	-0.04	1.03	-1.36	1.01	1.01	-	1.04	0.67	0.82	0.29	-0.01	-0.6	-0.31	-	0.37	-1.57	1.57	-0.8	-	-0.11	0.65	-0.27	0.98
Lsat_1_v5_gn_7_55541.1 (HMA2)	1.58	-	-	1.57	2.2	-	-	-	0.95	-	-	-	2.17	-	2.33	-	-	-	-	-	-	-	-	-	-	3.17	-	-	-	-	-
Lsat_1_v5_gn_7_60220.1 (SDRB)	-0.53	-0.5	-0.61	-2.84	-0.38	0.45	0.08	0.12	-1.54	-1.41	-0.02	-0.65	0.5	0.12	0.31	0.48	0.0	0.74	-0.84	-0.44	0.44	-0.52	0.44	0.33	-0.15	1.14	-0.08	0.1	-0.58	-0.13	0.79
Lsat_1_v5_gn_7_84180.1 (LecRK-IX.1)	-	-	-	0.95	0.37	-	-	0.81	-	-	-	-	2.95	0.78	-	-	-	-	-	2.45	-	0.88	-	-	3.21	-	-	-	-	-	-
Lsat_1_v5_gn_7_8820.1	-1.19	-	-1.23	-	1.03	-0.56	0.04	-0.3	0.28	-	-0.3	-	-0.21	0.82	-	0.45	0.74	-0.51	0.22	0.77	0.52	-0.14	0.38	-1.52	-0.5	2.25	0.73	-	-0.39	-0.47	0.8
Lsat_1_v5_gn_8_155560.1	-	-	-	-	-	-	-	-	-	2.38	-	-	-	-	-	-	-	3.23	-	0.71	-	-	-	-	3.7	-	-	-	0.79	-	-
Lsat_1_v5_gn_8_17620.1 (PUM4)	1.03	-	-	-	0.66	-	-	0.53	-	1.85	-	1.62	1.64	-	0.81	0.93	-	-	-	-	-	-	1.09	-	2.23	-	-	1.4	-	0.57	0.6
Lsat_1_v5_gn_8_30100.1 (SYT2)	-0.97	-	-	-	-	-0.36	-	-	0.11	1.41	-0.26	-	1.99	0.37	-	0.66	0.86	1.71	-1.41	-	-	-	0.76	-	2.44	-	-	-	0.57	0.28	1.58
Lsat_1_v5_gn_8_69840.1	-	-	-	-	-	-	-	-	2.13	0.88	-	-	-	-	-	-	2.43	-	-	-	0.77	-	-	-	3.24	-	2.06	-	-	1.17	0.88
Lsat_1_v5_gn_8_74741.1	-	-	-	-	0.25	0.78	-	-0.92	-0.05	0.67	0.5	-	-1.09	-	1.67	-0.95	-1.23	1.31	-0.17	1.73	-	-	-1.1	-	2.35	-1.42	-	1.28	-	1.62	-0.15
Lsat_1_v5_gn_8_92601.1	-	-	-	0.57	-	-	-	0.56	-	2.26	0.03	-0.05	-0.2	-0.03	-0.08	0.18	1.38	-0.32	-	-	-	-	-	-	-	-	-	0.8	-	2.51	2.69
Lsat_1_v5_gn_9_101981.1 (SIS7)	-	-	-	-	-0.25	-	-	-	0.85	-	-	-	-0.27	0.08	-	1.73	-	2.34	-	0.51	-	-	2.92	-	2.91	-	-	-	-	-	0.68
Lsat_1_v5_gn_9_102961.1 (MAN)	-	-	-	-	2.01	-	-	-	-	1.99	2.12	-	-	-	-	-	-	-	-	-	0.79	2.29	-	1.93	-	2.6	-	1.1	-	-	-
Lsat_1_v5_gn_9_31101.1 (COPT1)	-	-	-	-	-	-	1.98	-	1.43	-	-	-	2.29	-	-	-	-	-	-	-	1.39	-	-	-	3.2	2.14	-	1.69	-	-	-
Lsat_1_v5_gn_9_48440.1 (PAB4)	2.3	-	-	-	-	-	-	-	1.06	-	-	1.2	-	1.56	1.32	-	-	-	-	-	-	1.25	-	-	-	2.16	-	-	1.24	1.43	2.12
Lsat_1_v5_gn_9_56161.1 (MYB53)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2.59	-	2.46	3.07	-	3.06	-	-	1.44
Lsat_1_v5_gn_9_70560.1	-	-	-	1.08	-	0.73	-0.4	-	-	-	-0.33	0.47	1.25	-	-	-0.06	0.39	0.75	0.96	-	0.88	1.83	-	-	-	2.14	-0.78	-0.66	-	-0.68	2.13

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.