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  5. Lsat_1_v5_gn_1_8180.1

Lsat_1_v5_gn_1_8180.1


Description : not classified


Gene families : OG0000141 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000141_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_8180.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_1_115440.1 ATCPSF73-II,... not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_9_86200.1 No alias not classified 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003697 single-stranded DNA binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004358 glutamate N-acetyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004559 alpha-mannosidase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0005996 monosaccharide metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006013 mannose metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006525 arginine metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006526 arginine biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008080 N-acetyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008170 N-methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008234 cysteine-type peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0008290 F-actin capping protein complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008649 rRNA methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009064 glutamine family amino acid metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010639 negative regulation of organelle organization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0015923 mannosidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016410 N-acyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019318 hexose metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030832 regulation of actin filament length IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030833 regulation of actin filament polymerization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030834 regulation of actin filament depolymerization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030835 negative regulation of actin filament depolymerization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0030837 negative regulation of actin filament polymerization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031167 rRNA methylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031333 negative regulation of protein-containing complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032271 regulation of protein polymerization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032272 negative regulation of protein polymerization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032535 regulation of cellular component size IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032956 regulation of actin cytoskeleton organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032970 regulation of actin filament-based process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0033043 regulation of organelle organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043242 negative regulation of protein-containing complex disassembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043244 regulation of protein-containing complex disassembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043254 regulation of protein-containing complex assembly IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0044087 regulation of cellular component biogenesis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051016 barbed-end actin filament capping IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051128 regulation of cellular component organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051129 negative regulation of cellular component organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051493 regulation of cytoskeleton organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051494 negative regulation of cytoskeleton organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051693 actin filament capping IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0065008 regulation of biological quality IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0070475 rRNA base methylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0090066 regulation of anatomical structure size IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0110053 regulation of actin filament organization IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0140102 catalytic activity, acting on a rRNA IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901879 regulation of protein depolymerization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901880 negative regulation of protein depolymerization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1902903 regulation of supramolecular fiber organization IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1902904 negative regulation of supramolecular fiber organization IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR004264 Transposase_23 374 429
No external refs found!