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  5. Lsat_1_v5_gn_1_63140.1

Lsat_1_v5_gn_1_63140.1 (AtCDC48C)


Aliases : AtCDC48C

Description : platform ATPase CDC48


Gene families : OG0000903 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000903_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_63140.1
Cluster Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_1_52061.1 AtCDC48B platform ATPase CDC48 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0004190 aspartic-type endopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005575 cellular_component IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0005839 proteasome core complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006807 nitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0006887 exocytosis IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009056 catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0009057 macromolecule catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0010921 regulation of phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0018205 peptidyl-lysine modification IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019220 regulation of phosphate metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019538 protein metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019902 phosphatase binding IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0019903 protein phosphatase binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0019941 modification-dependent protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0031399 regulation of protein modification process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0032940 secretion by cell IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0035303 regulation of dephosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0035304 regulation of protein dephosphorylation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0046903 secretion IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0050790 regulation of catalytic activity IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051174 regulation of phosphorus metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051336 regulation of hydrolase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051603 proteolysis involved in protein catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0051604 protein maturation IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0065009 regulation of molecular function IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070001 aspartic-type peptidase activity IEP Lactuca Sativa GO terms from Neighborhoods
MF GO:0070569 uridylyltransferase activity IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0098797 plasma membrane protein complex IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0099023 vesicle tethering complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:0140352 export from cell IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:0140535 intracellular protein-containing complex IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901564 organonitrogen compound metabolic process IEP Lactuca Sativa GO terms from Neighborhoods
BP GO:1901575 organic substance catabolic process IEP Lactuca Sativa GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Lactuca Sativa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 461 502
IPR041569 AAA_lid_3 737 778
IPR003338 CDC4_N-term_subdom 81 162
IPR004201 Cdc48_dom2 183 246
IPR003959 ATPase_AAA_core 582 715
IPR003959 ATPase_AAA_core 296 425
No external refs found!