Bra000438 (VGD1)

Aliases : VGD1

Description : EC_3.1 hydrolase acting on ester bond. pectin methylesterase

Gene families : OG0006256 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra000438
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_285

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004857	enzyme inhibitor activity	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
MF	GO:0140678	molecular function inhibitor activity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004867	serine-type endopeptidase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005759	mitochondrial matrix	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006950	response to stress	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008061	chitin binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008964	phosphoenolpyruvate carboxylase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009611	response to wounding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015977	carbon fixation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030414	peptidase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031974	membrane-enclosed lumen	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043233	organelle lumen	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0061134	peptidase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0061135	endopeptidase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0070013	intracellular organelle lumen	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006501	Pectinesterase_inhib_dom	40	186
IPR000070	Pectinesterase_cat	285	579

External Links

No external refs found!