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  5. Bra004374

Bra004374


Description : not classified


Gene families : OG0024963 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra004374
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_99


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000152 nuclear ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0002097 tRNA wobble base modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0002098 tRNA wobble uridine modification IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003876 AMP deaminase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005680 anaphase-promoting complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005739 mitochondrion IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006188 IMP biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006260 DNA replication IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008033 tRNA processing IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008270 zinc ion binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009123 nucleoside monophosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0010215 cellulose microfibril organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016832 aldehyde-lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019239 deaminase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0030198 extracellular matrix organization IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032261 purine nucleotide salvage IEP Brassica rapa GO terms from Neighborhoods
BP GO:0032264 IMP salvage IEP Brassica rapa GO terms from Neighborhoods
CC GO:0033588 elongator holoenzyme complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043062 extracellular structure organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043094 cellular metabolic compound salvage IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043101 purine-containing compound salvage IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043169 cation binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043173 nucleotide salvage IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046040 IMP metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046872 metal ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0047623 adenosine-phosphate deaminase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0106380 purine ribonucleotide salvage IEP Brassica rapa GO terms from Neighborhoods
CC GO:0140535 intracellular protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR046848 E_motif 651 702
IPR002885 Pentatricopeptide_rpt 323 370
IPR002885 Pentatricopeptide_rpt 424 471
IPR002885 Pentatricopeptide_rpt 94 119
IPR002885 Pentatricopeptide_rpt 224 254
IPR002885 Pentatricopeptide_rpt 498 523
IPR002885 Pentatricopeptide_rpt 600 621
IPR002885 Pentatricopeptide_rpt 122 149
IPR002885 Pentatricopeptide_rpt 195 220
IPR002885 Pentatricopeptide_rpt 526 555
IPR002885 Pentatricopeptide_rpt 561 591
No external refs found!