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  5. Bra004319

Bra004319 (XYL1, GH31, TRG1, ATXYL1, AXY3)


Aliases : XYL1, GH31, TRG1, ATXYL1, AXY3

Description : 1,6-alpha-xylosidase *(AXYL1/2). EC_3.2 glycosylase


Gene families : OG0003166 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003166_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra004319
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_265

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_8_39840.1 XYL1, GH31,... EC_3.2 glycosylase. 1,6-alpha-xylosidase *(AXYL1/2) 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000160 phosphorelay signal transduction system IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003690 double-stranded DNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003779 actin binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004673 protein histidine kinase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005199 structural constituent of cell wall IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007010 cytoskeleton organization IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008092 cytoskeletal protein binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009664 plant-type cell wall organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140299 small molecule sensor activity IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR025887 Glyco_hydro_31_N_dom 178 247
IPR000322 Glyco_hydro_31_TIM 268 759
No external refs found!