Lsat_1_v5_gn_1_12380.1 (RPSAA, AP40, RP40, P40)

Aliases : RPSAA, AP40, RP40, P40

Description : component *(uS2) of small ribosomal-subunit (SSU) proteome

Gene families : OG0000748 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000748_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_1_12380.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_28

Target	Alias	Description	ECC score	Gene Family Method
Bra008030	RPSAA, AP40, RP40, P40	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra016062	RPSAA, AP40, RP40, P40	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra032101	RPSAA, AP40, RP40, P40	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.07	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.04574	RPSAA, AP40, RP40, P40	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.06	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006547	histidine metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016836	hydro-lyase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0044391	ribosomal subunit	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001865	Ribosomal_uS2	119	184
IPR001865	Ribosomal_uS2	20	114

External Links

No external refs found!

Lsat_1_v5_gn_1_12380.1 (RPSAA, AP40, RP40, P40)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation