Lsat_1_v5_gn_0_7601.1 (MDD2, AtMDD2)

Aliases : MDD2, AtMDD2

Description : EC_4.1 carbon-carbon lyase. mevalonate diphosphate decarboxylase

Gene families : OG0003290 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0003290_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_0_7601.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_172

Target	Alias	Description	ECC score	Gene Family Method	Actions
Bra007059	MDD2, AtMDD2	mevalonate diphosphate decarboxylase. EC_4.1 carbon-carbon lyase	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003872	6-phosphofructokinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004672	protein kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006417	regulation of translation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006448	regulation of translational elongation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006449	regulation of translational termination	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006468	protein phosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006486	protein glycosylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006793	phosphorus metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008152	metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008235	metalloexopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008238	exopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008417	fucosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008443	phosphofructokinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009891	positive regulation of biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009987	cellular process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010628	positive regulation of gene expression	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016197	endosomal transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016310	phosphorylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016482	cytosolic transport	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016740	transferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016758	hexosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016887	ATP hydrolysis activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0019200	carbohydrate kinase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0030145	manganese ion binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030258	lipid modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0030259	lipid glycosylation	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0030906	retromer, cargo-selective complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034248	regulation of amide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034250	positive regulation of amide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0043022	ribosome binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0043413	macromolecule glycosylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044237	cellular metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0044238	primary metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045727	positive regulation of translation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045901	positive regulation of translational elongation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0045905	positive regulation of translational termination	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0046540	U4/U6 x U5 tri-snRNP complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051128	regulation of cellular component organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051130	positive regulation of cellular component organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070006	metalloaminopeptidase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0070085	glycosylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0070403	NAD+ binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0097525	spliceosomal snRNP complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0097526	spliceosomal tri-snRNP complex	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006204	GHMP_kinase_N_dom	115	173
IPR041431	Mvd1_C	204	405

External Links

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Lsat_1_v5_gn_0_7601.1 (MDD2, AtMDD2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation