Lsat_1_v5_gn_0_6901.1 (SAND, ABCB18, PGP18)

Aliases : SAND, ABCB18, PGP18

Description : subfamily ABCB transporter. ABC-B-type transporter *(AMN1/2)

Gene families : OG0034570 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_0_6901.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_83

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004144	diacylglycerol O-acyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004784	superoxide dismutase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006801	superoxide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006996	organelle organization	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016411	acylglycerol O-acyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0051276	chromosome organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0071103	DNA conformation change	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	1025	1173
IPR003439	ABC_transporter-like_ATP-bd	367	516
IPR011527	ABC1_TM_dom	24	299
IPR011527	ABC1_TM_dom	684	954

External Links

No external refs found!

Lsat_1_v5_gn_0_6901.1 (SAND, ABCB18, PGP18)

Expression Profile

Co-expression Networks

Functional Annotation