Lsat_1_v5_gn_0_33621.1 (SWC4, ATSWC4)

Aliases : SWC4, ATSWC4

Description : recruitment factor of SWR1 chromatin remodeling complex *(SWC4). component *(SWC4) shared with NuA4/SWR1 complexes

Gene families : OG0002368 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0002368_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Lactuca sativa (Lsa) PCC: Lsat_1_v5_gn_0_33621.1
Cluster	Lactuca sativa (Lsa) Coexpression Clusters (HCCA Algorithm): Cluster_211

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003682	chromatin binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003916	DNA topoisomerase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004146	dihydrofolate reductase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0004376	glycolipid mannosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006265	DNA topological change	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006479	protein methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006497	protein lipidation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006505	GPI anchor metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006506	GPI anchor biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006664	glycolipid metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0008213	protein alkylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009247	glycolipid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Lactuca Sativa GO terms from Neighborhoods
CC	GO:0016459	myosin complex	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0016571	histone methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0017056	structural constituent of nuclear pore	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018022	peptidyl-lysine methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0018024	obsolete histone lysine N-methyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0018205	peptidyl-lysine modification	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0031267	small GTPase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0034968	histone lysine methylation	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0046654	tetrahydrofolate biosynthetic process	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051020	GTPase binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0051751	alpha-1,4-mannosyltransferase activity	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Lactuca Sativa GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Lactuca Sativa GO terms from Neighborhoods
BP	GO:1903509	liposaccharide metabolic process	IEP	Lactuca Sativa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR032563	DAMP1_SANT-like	103	179
IPR008468	DMAP1	334	389

External Links

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Lsat_1_v5_gn_0_33621.1 (SWC4, ATSWC4)

Expression Profile

Co-expression Networks

Functional Annotation