1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Bra040977

Bra040977 (PSBB)


Aliases : PSBB

Description : not classified


Gene families : OG0000745 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000745_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra040977
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Lsat_1_v5_gn_8_11001.1 PSBB not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_9_51000.1 PSBB not classified 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.03412 PSBB not classified 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005092 GDP-dissociation inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006090 pyruvate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006096 glycolytic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006164 purine nucleotide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006364 rRNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006754 ATP biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007264 small GTPase mediated signal transduction IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007265 Ras protein signal transduction IEP Brassica rapa GO terms from Neighborhoods
BP GO:0007266 Rho protein signal transduction IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009141 nucleoside triphosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009260 ribonucleotide biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009523 photosystem II IEP Brassica rapa GO terms from Neighborhoods
CC GO:0009579 thylakoid IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015977 carbon fixation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015986 proton motive force-driven ATP synthesis IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016072 rRNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016829 lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016830 carbon-carbon lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016831 carboxy-lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016832 aldehyde-lyase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Brassica rapa GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043167 ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0043169 cation binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046034 ATP metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046390 ribose phosphate biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0046872 metal ion binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:1902600 proton transmembrane transport IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 89 478
IPR000932 PS_antenna-like 1 91
No external refs found!