Bra039911 (EMB2296)


Aliases : EMB2296

Description : component *(uL2) of large ribosomal-subunit (LSU) proteome


Gene families : OG0000375 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000375_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra039911
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Bra010550 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra011664 EMB2296 component *(uL2) of large ribosomal-subunit (LSU) proteome 0.1 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_5_4380.1 EMB2296 component *(uL2) of large ribosomal-subunit (LSU) proteome 0.12 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_9_94880.1 EMB2296 component *(uL2) of large ribosomal-subunit (LSU) proteome 0.09 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Mp7g01860.1 EMB2296 component *(uL2) of large ribosomal-subunit (LSU) proteome 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Mp7g08730.1 EMB2296 component *(uL2) of large ribosomal-subunit (LSU) proteome 0.03 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr4.00337 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.08 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.00075 No alias component *(uL2) of large ribosomal-subunit (LSU) proteome 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006479 protein methylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008213 protein alkylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016570 histone modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016571 histone methylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0018022 peptidyl-lysine methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0018024 obsolete histone lysine N-methyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0018205 peptidyl-lysine modification IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0031267 small GTPase binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034968 histone lysine methylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043414 macromolecule methylation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0051020 GTPase binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR022669 Ribosomal_uL2_C 98 225
IPR022666 Ribosomal_uL2_RNA-bd_dom 13 89
No external refs found!