Bra039782

Description : component *(uL11) of large ribosomal-subunit (LSU) proteome

Gene families : OG0000458 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000458_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra039782
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_79

Target	Alias	Description	ECC score	Gene Family Method
Bra003134	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra017204	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra023104	No alias	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.03	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_54400.1	RPL12C	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_64240.1	RPL12C	component *(uL11) of large ribosomal-subunit (LSU) proteome	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003746	translation elongation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004635	phosphoribosyl-AMP cyclohydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004857	enzyme inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004864	protein phosphatase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006547	histidine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006553	lysine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008652	amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009085	lysine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009966	regulation of signal transduction	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0009982	pseudouridine synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010646	regulation of cell communication	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010921	regulation of phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016053	organic acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016866	intramolecular transferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019208	phosphatase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019212	phosphatase inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019238	cyclohydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019888	protein phosphatase regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0023051	regulation of signaling	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030234	enzyme regulator activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031399	regulation of protein modification process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0035303	regulation of dephosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046451	diaminopimelate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0048583	regulation of response to stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0050790	regulation of catalytic activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051336	regulation of hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065009	regulation of molecular function	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140223	general transcription initiation factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140678	molecular function inhibitor activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR020784	Ribosomal_uL11_N	13	69
IPR020783	Ribosomal_uL11_C	75	144

External Links

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Bra039782

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation