Bra039176 (SAMDC)

Aliases : SAMDC

Description : S-adenosyl methionine decarboxylase. EC_4.1 carbon-carbon lyase

Gene families : OG0001489 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001489_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra039176
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_7

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004014	adenosylmethionine decarboxylase activity	IEA	Interproscan
BP	GO:0006576	biogenic amine metabolic process	None	Extended
BP	GO:0006595	polyamine metabolic process	None	Extended
BP	GO:0006596	polyamine biosynthetic process	None	Extended
BP	GO:0006597	spermine biosynthetic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008215	spermine metabolic process	None	Extended
BP	GO:0008216	spermidine metabolic process	None	Extended
BP	GO:0008295	spermidine biosynthetic process	IEA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009309	amine biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042401	biogenic amine biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004521	RNA endonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004540	RNA nuclease activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016759	cellulose synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030243	cellulose metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030244	cellulose biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046527	glucosyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001985	S-AdoMet_decarboxylase_euk	7	330

External Links

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Bra039176 (SAMDC)

Expression Profile

Co-expression Networks

Functional Annotation