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  5. Bra003882

Bra003882 (RPSAA, AP40, RP40, P40)


Aliases : RPSAA, AP40, RP40, P40

Description : component *(uS2) of small ribosomal-subunit (SSU) proteome


Gene families : OG0000748 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000748_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra003882
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Bra016062 RPSAA, AP40, RP40, P40 component *(uS2) of small ribosomal-subunit (SSU) proteome 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra032101 RPSAA, AP40, RP40, P40 component *(uS2) of small ribosomal-subunit (SSU) proteome 0.05 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_1_38480.1 RPSAA, AP40, RP40, P40 component *(uS2) of small ribosomal-subunit (SSU) proteome 0.01 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003690 double-stranded DNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003746 translation elongation factor activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006414 translational elongation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006547 histidine metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008652 amino acid biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019238 cyclohydrolase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Brassica rapa GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001865 Ribosomal_uS2 17 111
IPR001865 Ribosomal_uS2 114 180
No external refs found!