Bra038081 (PPD1)

Aliases : PPD1

Description : protein involved in PS-I assembly *(PPD1)

Gene families : OG0014308 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra038081
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_41

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	None	Extended
CC	GO:0009523	photosystem II	IEA	Interproscan
CC	GO:0009654	photosystem II oxygen evolving complex	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015979	photosynthesis	IEA	Interproscan
CC	GO:0019898	extrinsic component of membrane	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990204	oxidoreductase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003735	structural constituent of ribosome	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003747	translation release factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005198	structural molecule activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005216	monoatomic ion channel activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005261	monoatomic cation channel activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005840	ribosome	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006163	purine nucleotide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006415	translational termination	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006553	lysine metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006754	ATP biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008079	translation termination factor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009085	lysine biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009089	lysine biosynthetic process via diaminopimelate	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009116	nucleoside metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009117	nucleotide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009165	nucleotide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009259	ribonucleotide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010109	regulation of photosynthesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010206	photosystem II repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010207	photosystem II assembly	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0010242	oxygen evolving activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015078	proton transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015252	proton channel activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016491	oxidoreductase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016872	intramolecular lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019693	ribose phosphate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022411	cellular component disassembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030091	protein repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032984	protein-containing complex disassembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042548	regulation of photosynthesis, light reaction	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042549	photosystem II stabilization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043467	regulation of generation of precursor metabolites and energy	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043603	amide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043604	amide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044238	primary metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046034	ATP metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046451	diaminopimelate metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046855	obsolete inositol phosphate dephosphorylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051920	peroxiredoxin activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072521	purine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090407	organophosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901657	glycosyl compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002683	PsbP_C	89	264

External Links

No external refs found!

Bra038081 (PPD1)

Expression Profile

Co-expression Networks

Functional Annotation