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  5. Bra035911

Bra035911 (APO3)


Aliases : APO3

Description : organelle RNA splicing factor *(APO)


Gene families : OG0029763 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra035911
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Label Co-occ.Cluster_80


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Brassica rapa GO terms from Neighborhoods
MF GO:0003872 6-phosphofructokinase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004519 endonuclease activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004521 RNA endonuclease activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004540 RNA nuclease activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004549 tRNA-specific ribonuclease activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005737 cytoplasm IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006082 organic acid metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006090 pyruvate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006091 generation of precursor metabolites and energy IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006096 glycolytic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008033 tRNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008443 phosphofructokinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009439 cyanate metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016052 carbohydrate catabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016887 ATP hydrolysis activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016892 RNA endonuclease activity, producing 3'-phosphomonoesters IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019200 carbohydrate kinase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0034470 ncRNA processing IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044281 small molecule metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR023342 APO_dom 36 232
IPR023342 APO_dom 262 384
No external refs found!