Bra035745 (TOP6B, ATTOP6B, HYP6,...)

Aliases : TOP6B, ATTOP6B, HYP6, HLQ, RHL3, BIN3

Description : component *(TOP6B) of somatic DNA topoisomerase VI complex

Gene families : OG0020782 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra035745
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_46

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003916	DNA topoisomerase activity	None	Extended
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006265	DNA topological change	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0071103	DNA conformation change	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000725	recombinational repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004363	glutathione synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006099	tricarboxylic acid cycle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006302	double-strand break repair	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006310	DNA recombination	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006749	glutathione metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006750	glutathione biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006766	vitamin metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006771	riboflavin metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008703	5-amino-6-(5-phosphoribosylamino)uracil reductase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009110	vitamin biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009231	riboflavin biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016728	oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016881	acid-amino acid ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019184	nonribosomal peptide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0030488	tRNA methylation	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0034708	methyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043527	tRNA methyltransferase complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1904091	non-ribosomal peptide synthetase activity	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR015320	TopoVI_B_transducer	411	580
IPR003594	HATPase_C	53	240

External Links

No external refs found!

Bra035745 (TOP6B, ATTOP6B, HYP6,...)

Expression Profile

Co-expression Networks

Functional Annotation