Bra035618 (RPL6, EMB2394)

Aliases : RPL6, EMB2394

Description : component *(uL6c) of large plastid ribosomal-subunit proteome

Gene families : OG0022571 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra035618
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_57

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0000786	nucleosome	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008170	N-methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008649	rRNA methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009606	tropism	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0009916	alternative oxidase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010274	hydrotropism	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016436	rRNA (uridine) methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016597	amino acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031167	rRNA methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0032993	protein-DNA complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043177	organic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070042	rRNA (uridine-N3-)-methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0070475	rRNA base methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_uL6_a/b-dom	127	212
IPR020040	Ribosomal_uL6_a/b-dom	56	118

External Links

No external refs found!

Bra035618 (RPL6, EMB2394)

Expression Profile

Co-expression Networks

Functional Annotation