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  5. Bra003513

Bra003513


Description : not classified


Gene families : OG0000623 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000623_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra003513
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Bra022363 No alias not classified 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Bra027062 MEF9 RNA editing factor *(MEF9) 0.04 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000152 nuclear ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005680 anaphase-promoting complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:1990234 transferase complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR046848 E_motif 330 378
IPR002885 Pentatricopeptide_rpt 207 255
IPR002885 Pentatricopeptide_rpt 105 152
IPR002885 Pentatricopeptide_rpt 79 102
IPR002885 Pentatricopeptide_rpt 181 200
IPR002885 Pentatricopeptide_rpt 283 306
IPR032867 DYW_dom 415 507
No external refs found!