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  5. Bra034864

Bra034864 (AtCHC1, CHC1, HAS1)


Aliases : AtCHC1, CHC1, HAS1

Description : heavy chain of clathrin triskelion


Gene families : OG0000457 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0000457_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra034864
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_157

Target Alias Description ECC score Gene Family Method Actions
Spov3_chr4.04330 AtCHC2, CHC2 MAP3K-MEKK protein kinase. heavy chain of clathrin... 0.02 OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA Interproscan
CC GO:0030132 clathrin coat of coated pit IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004478 methionine adenosyltransferase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005247 voltage-gated chloride channel activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005253 monoatomic anion channel activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0005254 chloride channel activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005839 proteasome core complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006743 ubiquinone metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006744 ubiquinone biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006820 monoatomic anion transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006821 chloride transport IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0015108 chloride transmembrane transporter activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0015698 inorganic anion transport IEP Brassica rapa GO terms from Neighborhoods
CC GO:0016020 membrane IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Brassica rapa GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Brassica rapa GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0017119 Golgi transport complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0022832 voltage-gated channel activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0030119 AP-type membrane coat adaptor complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0030131 clathrin adaptor complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0031267 small GTPase binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042180 cellular ketone metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0042181 ketone biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044030 regulation of DNA methylation IEP Brassica rapa GO terms from Neighborhoods
BP GO:0044272 sulfur compound biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046500 S-adenosylmethionine metabolic process IEP Brassica rapa GO terms from Neighborhoods
MF GO:0051020 GTPase binding IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051052 regulation of DNA metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0051603 proteolysis involved in protein catabolic process IEP Brassica rapa GO terms from Neighborhoods
CC GO:0110165 cellular anatomical entity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0140535 intracellular protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901661 quinone metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:1901663 quinone biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR022365 Clathrin_H-chain_propeller_rpt 154 197
IPR022365 Clathrin_H-chain_propeller_rpt 20 56
IPR000547 Clathrin_H-chain/VPS_repeat 781 911
IPR000547 Clathrin_H-chain/VPS_repeat 926 1062
IPR000547 Clathrin_H-chain/VPS_repeat 623 727
IPR000547 Clathrin_H-chain/VPS_repeat 1073 1213
IPR000547 Clathrin_H-chain/VPS_repeat 518 619
IPR000547 Clathrin_H-chain/VPS_repeat 1221 1360
IPR015348 Clathrin_H-chain_linker_core 344 367
No external refs found!