Bra032856 (ABCB13, PGP13)

Aliases : ABCB13, PGP13

Description : subfamily ABCB transporter

Gene families : OG0008415 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra032856
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_258

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140359	ABC-type transporter activity	IEA	Interproscan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003849	3-deoxy-7-phosphoheptulonate synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004497	monooxygenase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004512	inositol-3-phosphate synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004779	sulfate adenylyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004781	sulfate adenylyltransferase (ATP) activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005506	iron ion binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006020	inositol metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006021	inositol biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006066	alcohol metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006817	phosphate ion transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0008610	lipid biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009072	aromatic amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015698	inorganic anion transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016843	amine-lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016844	strictosidine synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016872	intramolecular lyase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019751	polyol metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046165	alcohol biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046173	polyol biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046872	metal ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070566	adenylyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	384	532
IPR003439	ABC_transporter-like_ATP-bd	1017	1165
IPR011527	ABC1_TM_dom	678	948
IPR011527	ABC1_TM_dom	41	314

External Links

No external refs found!

Bra032856 (ABCB13, PGP13)

Expression Profile

Co-expression Networks

Functional Annotation