Bra003270 (NAP57, AtCBF5, CBF5, AtNAP57)

Aliases : NAP57, AtCBF5, CBF5, AtNAP57

Description : pseudouridine synthase component *(Nap57/CBF5) of H/ACA snoRNP RNA pseudouridylation complex

Gene families : OG0001172 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0001172_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra003270
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_94

Target	Alias	Description	ECC score	Gene Family Method
Lsat_1_v5_gn_2_87640.1	NAP57, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Lsat_1_v5_gn_4_170400.1	NAP57, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.01	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr1.00109	NAP57, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr2.02277	NAP57, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol
Spov3_chr5.00862	NAP57, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.02	OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003735	structural constituent of ribosome	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003883	CTP synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004486	methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005198	structural molecule activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005515	protein binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005575	cellular_component	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0005840	ribosome	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009058	biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016571	histone methylation	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018022	peptidyl-lysine methylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0030515	snoRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0032040	small-subunit processome	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0034457	Mpp10 complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0034511	U3 snoRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034968	histone lysine methylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043603	amide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043604	amide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0110165	cellular anatomical entity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901576	organic substance biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002501	PsdUridine_synth_N	88	204
IPR032819	TruB_C	205	271
IPR002478	PUA	275	347
IPR012960	Dyskerin-like	27	84

External Links

No external refs found!

Bra003270 (NAP57, AtCBF5, CBF5, AtNAP57)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation