Bra030032 (AGL9, SEP3)

Aliases : AGL9, SEP3

Description : MADS/AGL-type transcription factor. regulatory protein *(SEPALLATA) of floral meristem identity control

Gene families : OG0004784 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): OG0004784_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra030032
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_9

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003951	NAD+ kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006739	NADP metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006741	NADP biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019359	nicotinamide nucleotide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051273	beta-glucan metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0098797	plasma membrane protein complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	93	175
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Bra030032 (AGL9, SEP3)

Expression Profile

Co-expression Networks

Functional Annotation