Bra030028 (PUB6)

Aliases : PUB6

Description : E3 ubiquitin ligase

Gene families : OG0006715 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra030028
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_224

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	acyltransferase activity	None	Extended
MF	GO:0016755	aminoacyltransferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0000272	polysaccharide catabolic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0000786	nucleosome	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0003333	amino acid transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003777	microtubule motor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004096	catalase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004673	protein histidine kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0005488	binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006334	nucleosome assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006355	regulation of DNA-templated transcription	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006865	amino acid transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007017	microtubule-based process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008092	cytoskeletal protein binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009314	response to radiation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009416	response to light stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009581	detection of external stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009582	detection of abiotic stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009583	detection of light stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009584	detection of visible light	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009628	response to abiotic stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009889	regulation of biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0009987	cellular process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0010181	FMN binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015297	antiporter activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0015631	tubulin binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015849	organic acid transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016043	cellular component organization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016160	amylase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016161	beta-amylase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019222	regulation of metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031047	regulatory ncRNA-mediated gene silencing	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031323	regulation of cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0032993	protein-DNA complex	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046942	carboxylic acid transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051252	regulation of RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0051606	detection of stimulus	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0071840	cellular component organization or biogenesis	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140299	small molecule sensor activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1903825	organic acid transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:2001070	starch binding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	269	338

External Links

No external refs found!

Bra030028 (PUB6)

Expression Profile

Co-expression Networks

Functional Annotation