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  5. Bra029935

Bra029935


Description : not classified


Gene families : OG0007480 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa (Bra) PCC: Bra029935
Cluster Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_99


Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0000152 nuclear ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0004843 cysteine-type deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0005680 anaphase-promoting complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006144 purine nucleobase metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008233 peptidase activity IEP Brassica rapa GO terms from Neighborhoods
MF GO:0008234 cysteine-type peptidase activity IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009112 nucleobase metabolic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0009113 purine nucleobase biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0016579 protein deubiquitination IEP Brassica rapa GO terms from Neighborhoods
MF GO:0019783 ubiquitin-like protein peptidase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Brassica rapa GO terms from Neighborhoods
BP GO:0036211 protein modification process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0043687 post-translational protein modification IEP Brassica rapa GO terms from Neighborhoods
BP GO:0046112 nucleobase biosynthetic process IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070646 protein modification by small protein removal IEP Brassica rapa GO terms from Neighborhoods
BP GO:0070647 protein modification by small protein conjugation or removal IEP Brassica rapa GO terms from Neighborhoods
MF GO:0101005 deubiquitinase activity IEP Brassica rapa GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:0140535 intracellular protein-containing complex IEP Brassica rapa GO terms from Neighborhoods
CC GO:1990234 transferase complex IEP Brassica rapa GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_rpt 374 421
IPR002885 Pentatricopeptide_rpt 273 320
IPR006671 Cyclin_N 776 830
IPR046849 Eplus_motif 559 586
IPR032867 DYW_dom 590 683
IPR002885 Pentatricopeptide_rpt 108 133
IPR002885 Pentatricopeptide_rpt 179 205
IPR002885 Pentatricopeptide_rpt 207 234
IPR002885 Pentatricopeptide_rpt 452 474
IPR046848 E_motif 492 554
No external refs found!