Bra000285 (PRPL3)

Aliases : PRPL3

Description : component *(uL3c) of large plastid ribosomal-subunit proteome

Gene families : OG0027292 (OrthoFinder Output from 4 Species - Bra, Lsa, Mpo, and Sol) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa (Bra) PCC: Bra000285
Cluster	Brassica rapa (Bra) Coexpression Clusters (HCCA Algorithm): Cluster_41

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003676	nucleic acid binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003723	RNA binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004618	phosphoglycerate kinase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006457	protein folding	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006520	amino acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008235	metalloexopeptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009521	photosystem	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009523	photosystem II	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0009982	pseudouridine synthase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016874	ligase activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018193	peptidyl-amino acid modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0019752	carboxylic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:0019898	extrinsic component of membrane	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043038	amino acid activation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043039	tRNA aminoacylation	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0043436	oxoacid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0051920	peroxiredoxin activity	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0070006	metalloaminopeptidase activity	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	Brassica rapa GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Brassica rapa GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Brassica rapa GO terms from Neighborhoods
CC	GO:1990204	oxidoreductase complex	IEP	Brassica rapa GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000597	Ribosomal_uL3	145	232

External Links

No external refs found!

Bra000285 (PRPL3)

Expression Profile

Co-expression Networks

Functional Annotation